High-Protein Pepperoni Breakfast Cups

Featured in: Family Favorites

These savory breakfast cups combine eggs with pepperoni, mozzarella, and pizza sauce for a handheld morning meal. Baked in muffin tins, they're packed with protein and classic Italian flavors from herbs like oregano and basil.

The Greek yogurt keeps them light while adding creaminess. Each cup delivers 11g of protein with only 2g of carbs, making them perfect for high-protein or low-carb eating.

Prepare a batch in 35 minutes and enjoy throughout the week—just reheat and serve. Customize by swapping pepperoni for vegetables or changing the cheese blend.

Updated on Mon, 09 Feb 2026 23:10:38 GMT
Golden-brown High-Protein Pepperoni Breakfast Cups fresh from the oven, melted mozzarella bubbling over the edges of the muffin tin. Save
Golden-brown High-Protein Pepperoni Breakfast Cups fresh from the oven, melted mozzarella bubbling over the edges of the muffin tin. | pulseoven.com

Start your day with the bold, savory flavors of pizza in a convenient, portable form. These High-Protein Pepperoni Breakfast Cups are mini frittatas that pack a punch with zesty pepperoni, melted mozzarella, and classic herbs. They are the perfect solution for busy mornings when you need a satisfying, low-carb meal that feels like a treat.

Golden-brown High-Protein Pepperoni Breakfast Cups fresh from the oven, melted mozzarella bubbling over the edges of the muffin tin. Save
Golden-brown High-Protein Pepperoni Breakfast Cups fresh from the oven, melted mozzarella bubbling over the edges of the muffin tin. | pulseoven.com

What sets these breakfast cups apart is the addition of Greek yogurt and milk, which creates a light and fluffy egg base. By mixing the pizza sauce and toppings directly into the filling, every bite is infused with the nostalgic taste of a pepperoni pizza, minus the heavy crust.

Ingredients

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  • 6 large eggs
  • 1/2 cup plain Greek yogurt (unsweetened)
  • 1/4 cup milk
  • 1/4 tsp salt
  • 1/4 tsp black pepper
  • 1/2 tsp dried oregano
  • 1/2 tsp dried basil
  • 3/4 cup shredded mozzarella cheese
  • 1/2 cup mini pepperoni slices (or regular pepperoni, chopped)
  • 1/4 cup finely diced red bell pepper
  • 2 tbsp finely diced red onion
  • 2 tbsp grated Parmesan cheese
  • 2 tbsp pizza sauce (plus extra for serving, optional)

Instructions

Step 1
Preheat oven to 375°F (190°C). Grease a 6-cup muffin tin or line with silicone liners.
Step 2
In a medium bowl, whisk together eggs, Greek yogurt, milk, salt, pepper, oregano, and basil until smooth.
Step 3
In a separate bowl, combine mozzarella, pepperoni, bell pepper, red onion, Parmesan, and pizza sauce.
Step 4
Evenly divide the filling mixture among the muffin cups.
Step 5
Pour the egg mixture over the filling, filling each cup about 3/4 full. Use a fork to gently stir each cup to distribute the filling.
Step 6
Bake for 18–20 minutes, or until the centers are just set and tops are lightly golden.
Step 7
Cool for 5 minutes before removing from the tin. Serve warm with extra pizza sauce if desired.

Zusatztipps für die Zubereitung

To ensure the best texture, make sure the Greek yogurt is fully incorporated into the egg mixture until no large lumps remain. Using silicone muffin liners is highly recommended, as they make it incredibly easy to pop the cups out without any sticking or mess.

Varianten und Anpassungen

You can easily customize these cups to suit your preferences. For a vegetarian version, simply omit the pepperoni and add sautéed mushrooms or fresh spinach. If you prefer a sharper cheese flavor, try substituting the mozzarella with cheddar or provolone.

Serviervorschläge

Serve these breakfast cups warm with a side of extra warm marinara or pizza sauce for dipping. They also pair beautifully with a fresh side of fruit or a simple arugula salad to round out your morning meal.

Savory High-Protein Pepperoni Breakfast Cups served on a white plate, garnished with fresh basil and a side of warm marinara sauce for dipping. Save
Savory High-Protein Pepperoni Breakfast Cups served on a white plate, garnished with fresh basil and a side of warm marinara sauce for dipping. | pulseoven.com

These High-Protein Pepperoni Breakfast Cups are the ultimate blend of nutrition and flavor. Whether you are meal prepping for the week or looking for a fun family breakfast, these pizza-inspired egg bites are sure to become a regular in your rotation.

Recipe FAQs

How do I store these breakfast cups?

Keep in an airtight container in the refrigerator for up to 4 days. Reheat gently in the microwave for 30–60 seconds until warm.

Can I make these vegetarian?

Yes, simply omit the pepperoni and add sautéed mushrooms, spinach, or bell peppers instead. The rest of the ingredients remain the same.

What cheese works best?

Mozzarella provides classic pizza flavor, but provolone, cheddar, or an Italian blend also work well. Use what you enjoy most.

Can I freeze these?

Yes, freeze cooled cups in a freezer-safe bag for up to 2 months. Thaw overnight in the fridge and reheat before serving.

Do I need pizza sauce?

It's not required but adds authentic pizza flavor. You can substitute marinara or omit it entirely—the herbs and pepperoni still provide great taste.

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High-Protein Pepperoni Breakfast Cups

Savory egg muffins with pepperoni, mozzarella, and pizza flavors baked in muffin tins.

Prep Time
15 min
Cook Time
20 min
Overall Time
35 min
Created by Henry Baker


Skill Level Easy

Cuisine American

Makes 3 Portions

Diet Preferences Low in Carbs

What You'll Need

Egg Mixture

01 6 large eggs
02 1/2 cup plain Greek yogurt, unsweetened
03 1/4 cup milk
04 1/4 teaspoon salt
05 1/4 teaspoon black pepper
06 1/2 teaspoon dried oregano
07 1/2 teaspoon dried basil

Filling

01 3/4 cup shredded mozzarella cheese
02 1/2 cup mini pepperoni slices
03 1/4 cup finely diced red bell pepper
04 2 tablespoons finely diced red onion
05 2 tablespoons grated Parmesan cheese
06 2 tablespoons pizza sauce

How to Make

Step 01

Prepare the oven and muffin tin: Preheat oven to 375°F. Grease a 6-cup muffin tin or line with silicone liners.

Step 02

Mix the egg base: In a medium bowl, whisk together eggs, Greek yogurt, milk, salt, pepper, oregano, and basil until smooth and well combined.

Step 03

Combine filling ingredients: In a separate bowl, combine mozzarella, pepperoni, bell pepper, red onion, Parmesan, and pizza sauce.

Step 04

Distribute filling: Evenly divide the filling mixture among the 6 muffin cups.

Step 05

Add egg mixture: Pour the egg mixture over the filling, filling each cup approximately 3/4 full. Use a fork to gently stir each cup to distribute the filling evenly.

Step 06

Bake the cups: Bake for 18 to 20 minutes, or until the centers are just set and the tops are lightly golden.

Step 07

Cool and serve: Cool for 5 minutes before removing from the tin. Serve warm with additional pizza sauce if desired.

Tools Needed

  • 6-cup muffin tin
  • Mixing bowls
  • Whisk
  • Measuring cups and spoons
  • Fork

Allergens

Always review each ingredient for allergens. Ask a healthcare provider if you're not sure.
  • Contains eggs
  • Contains milk and dairy products
  • May contain gluten if pepperoni or pizza sauce contain wheat derivatives; check packaging for allergen information

Nutrition Info (per serving)

Use this nutrition estimate as a guideline, but be sure to verify with a health expert if needed.
  • Calories: 135
  • Fats: 9 g
  • Carbohydrates: 2 g
  • Proteins: 11 g

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